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+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Welcome to ATMOS\n",
+    "\n",
+    "The pyatmos package is an archive of scientific routines that aims to implement the estimation of atmospheric properties for various atmosphere models. Currently, feasible atmosphere models include:\n",
+    "\n",
+    "1. International Standard Atmosphere(ISA) Model up to 86kms  \n",
+    "2. NRLMSISE-00"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## How to install\n",
+    "\n",
+    "pyatmos can be installed with\n",
+    "\n",
+    "```python\n",
+    "pip install pyatmos\n",
+    "```"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## How to use\n",
+    "\n",
+    "### International Standard Atmosphere\n",
+    "\n",
+    "Calculate the ISA at 10km."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "{'temperature[K]': 223.25186489868483,\n",
+       " 'pressure[Pa]': 26499.756053713343,\n",
+       " 'density[kg/m^3]': 0.41350863360218376}"
+      ]
+     },
+     "execution_count": 1,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    ">>> from pyatmos import isa\n",
+    ">>> isa(10)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Calculate the ISA at a geopotential altitude of 50km."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "{'temperature[K]': 270.65,\n",
+       " 'pressure[Pa]': 75.94476758456234,\n",
+       " 'density[kg/m^3]': 0.0009775244455727493}"
+      ]
+     },
+     "execution_count": 2,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    ">>> isa(50,'geopotential')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Calculate the ISA at 90km."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 6,
+   "metadata": {
+    "scrolled": true
+   },
+   "outputs": [
+    {
+     "ename": "Exception",
+     "evalue": "geopotential altitude should be in [-0.610, 84.852] km",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
+      "\u001b[0;31mException\u001b[0m                                 Traceback (most recent call last)",
+      "\u001b[0;32m<ipython-input-6-c1c40cd35a30>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0misa\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;36m90\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m'geopotential'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m",
+      "\u001b[0;32m~/Downloads/ATMOS/pyatmos/StandardAtmosphere/StandardAtmosphere.py\u001b[0m in \u001b[0;36misa\u001b[0;34m(altitude, altitude_type)\u001b[0m\n\u001b[1;32m     83\u001b[0m     \u001b[0;32mif\u001b[0m \u001b[0maltitude_type\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0;34m'geopotential'\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     84\u001b[0m         \u001b[0;32mif\u001b[0m \u001b[0maltitude\u001b[0m \u001b[0;34m<\u001b[0m \u001b[0mgeopotential_alt\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;32mor\u001b[0m \u001b[0maltitude\u001b[0m \u001b[0;34m>\u001b[0m \u001b[0mgeopotential_alt\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m-\u001b[0m\u001b[0;36m1\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 85\u001b[0;31m             \u001b[0;32mraise\u001b[0m \u001b[0mException\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m\"geopotential altitude should be in [-0.610, 84.852] km\"\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m     86\u001b[0m     \u001b[0;32melif\u001b[0m \u001b[0maltitude_type\u001b[0m \u001b[0;34m==\u001b[0m \u001b[0;34m'geometric'\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     87\u001b[0m         \u001b[0;32mif\u001b[0m \u001b[0maltitude\u001b[0m \u001b[0;34m<\u001b[0m \u001b[0mgeometric_alt\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;36m0\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;32mor\u001b[0m \u001b[0maltitude\u001b[0m \u001b[0;34m>\u001b[0m \u001b[0mgeometric_alt\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m-\u001b[0m\u001b[0;36m1\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
+      "\u001b[0;31mException\u001b[0m: geopotential altitude should be in [-0.610, 84.852] km"
+     ]
+    }
+   ],
+   "source": [
+    ">>> isa(90,'geopotential')"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### NRLMSISE-00"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Get the space weather data"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 7,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Updating the space weather data ... Finished\n"
+     ]
+    }
+   ],
+   "source": [
+    ">>> from pyatmos import download_sw,read_sw\n",
+    ">>> # Download or update the space weather file from www.celestrak.com\n",
+    ">>> swfile = download_sw() \n",
+    ">>> # Read the space weather data\n",
+    ">>> swdata = read_sw(swfile) "
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Calculate the temperatures, densities not including anomalous oxygen using the NRLMSISE-00 model at 70km, 25 degrees latitude, 102 degrees longitude on the date October 5, 2015 at 03:00:00 UTC."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 11,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "{'Year': 2015, 'DayOfYear': 278, 'SecondOfDay': 10800.0, 'Latitude[deg]': 25, 'Longitude[deg]': 102, 'Altitude[km]': 70, 'LocalSolarTime[hours]': 9.8, 'f107Average[10^-22 W/m^2/Hz]': 150, 'f107Daily[10^-22 W/m^2/Hz]': 150, 'ApDaily': 4, 'Ap3Hourly': array([4, 4, 4, 4, 4, 4, 4])} \n",
+      "\n",
+      "{'Density': {'He[1/m^3]': 9100292488300570.0, 'O[1/m^3]': 0, 'N2[1/m^3]': 1.3439413974205876e+21, 'O2[1/m^3]': 3.52551376755781e+20, 'AR[1/m^3]': 1.6044163757370681e+19, 'H[1/m^3]': 0, 'N[1/m^3]': 0, 'ANM O[1/m^3]': 0, 'RHO[kg/m^3]': 8.225931818480755e-05}, 'Temperature': {'TINF[K]': 1027.3184649, 'TG[K]': 219.9649472491653}}\n"
+     ]
+    }
+   ],
+   "source": [
+    ">>> from pyatmos import nrlmsise00\n",
+    ">>> # Set a specific time and location\n",
+    ">>> t = '2015-10-05 03:00:00' # time(UTC)\n",
+    ">>> lat,lon = 25,102 # latitude and longitude [degree]\n",
+    ">>> alt = 70 # altitude [km]\n",
+    ">>> para_input,para_output = nrlmsise00(t,lat,lon,alt,swdata)\n",
+    ">>> print(para_input,'\\n')\n",
+    ">>> print(para_output)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Calculate the temperatures, densities not including anomalous oxygen using the NRLMSISE-00 model at 100km, -65 degrees latitude, -120 degrees longitude on the date July 8, 2004 at 10:30:50 UTC."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 13,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "{'Year': 2004, 'DayOfYear': 190, 'SecondOfDay': 37850.0, 'Latitude[deg]': -65, 'Longitude[deg]': -120, 'Altitude[km]': 100, 'LocalSolarTime[hours]': 2.5138888888888893, 'f107Average[10^-22 W/m^2/Hz]': 109.0, 'f107Daily[10^-22 W/m^2/Hz]': 79.3, 'ApDaily': 2, 'Ap3Hourly': array([2.   , 2.   , 2.   , 2.   , 2.   , 3.125, 4.625])} \n",
+      "\n",
+      "{'Density': {'He[1/m^3]': 119477307274636.89, 'O[1/m^3]': 4.1658304136233e+17, 'N2[1/m^3]': 7.521248904485598e+18, 'O2[1/m^3]': 1.7444969074975662e+18, 'AR[1/m^3]': 7.739495767665198e+16, 'H[1/m^3]': 22215754381448.5, 'N[1/m^3]': 152814261016.3964, 'ANM O[1/m^3]': 1.8278224834873257e-37, 'RHO[kg/m^3]': 4.584596293339505e-07}, 'Temperature': {'TINF[K]': 1027.3184649, 'TG[K]': 192.5868649143824}}\n"
+     ]
+    }
+   ],
+   "source": [
+    ">>> t = '2004-07-08 10:30:50' \n",
+    ">>> lat,lon,alt = -65,-120,100 \n",
+    ">>> para_input,para_output = nrlmsise00(t,lat,lon,alt,swdata)\n",
+    ">>> print(para_input,'\\n')\n",
+    ">>> print(para_output)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Calculate the temperatures, densities including anomalous oxygen using the NRLMSISE-00 model at 500km, 85 degrees latitude, 210 degrees longitude on the date February 15, 2010 at 12:18:37 UTC."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 15,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "{'Year': 2010, 'DayOfYear': 46, 'SecondOfDay': 44317.0, 'Latitude[deg]': 85, 'Longitude[deg]': 210, 'Altitude[km]': 500, 'LocalSolarTime[hours]': 2.310277777777779, 'f107Average[10^-22 W/m^2/Hz]': 83.4, 'f107Daily[10^-22 W/m^2/Hz]': 89.4, 'ApDaily': 14, 'Ap3Hourly': array([14.   ,  5.   ,  7.   ,  6.   , 15.   ,  5.375,  4.   ])} \n",
+      "\n",
+      "{'Density': {'He[1/m^3]': 2830075020953.2334, 'O[1/m^3]': 5866534735436.941, 'N2[1/m^3]': 59516979995.87239, 'O2[1/m^3]': 1558775273.2950978, 'AR[1/m^3]': 825564.7467165776, 'H[1/m^3]': 142697077779.00586, 'N[1/m^3]': 53473812381.891624, 'ANM O[1/m^3]': 4258921381.0652237, 'RHO[kg/m^3]': 1.790487924033088e-13}, 'Temperature': {'TINF[K]': 850.5598890315023, 'TG[K]': 850.5507885501303}}\n"
+     ]
+    }
+   ],
+   "source": [
+    ">>> t = '2010-02-15 12:18:37' \n",
+    ">>> lat,lon,alt = 85,210,500 \n",
+    ">>> para_input,para_output = nrlmsise00(t,lat,lon,alt,swdata,omode='Oxygen')\n",
+    ">>> print(para_input,'\\n')\n",
+    ">>> print(para_output)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "Calculate the temperatures, densities including anomalous oxygen using the NRLMSISE-00 model at 900km, 3 degrees latitude, 5 degrees longitude on the date August 20, 2019 at 23:10:59 UTC. It uses not only Daily AP but also 3-hour AP magnetic index."
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 16,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "{'Year': 2019, 'DayOfYear': 232, 'SecondOfDay': 83459.0, 'Latitude[deg]': 3, 'Longitude[deg]': 5, 'Altitude[km]': 900, 'LocalSolarTime[hours]': 23.51638888888889, 'f107Average[10^-22 W/m^2/Hz]': 67.4, 'f107Daily[10^-22 W/m^2/Hz]': 67.7, 'ApDaily': 4, 'Ap3Hourly': array([4.   , 4.   , 3.   , 3.   , 5.   , 3.625, 3.5  ])} \n",
+      "\n",
+      "{'Density': {'He[1/m^3]': 74934329990.0412, 'O[1/m^3]': 71368139.39199762, 'N2[1/m^3]': 104.72048033793158, 'O2[1/m^3]': 0.09392848471935447, 'AR[1/m^3]': 1.3231114543012155e-07, 'H[1/m^3]': 207405192640.34592, 'N[1/m^3]': 3785341.821909535, 'ANM O[1/m^3]': 1794317839.638502, 'RHO[kg/m^3]': 8.914971667362366e-16}, 'Temperature': {'TINF[K]': 646.8157488121493, 'TG[K]': 646.8157488108872}}\n"
+     ]
+    }
+   ],
+   "source": [
+    ">>> t = '2019-08-20 23:10:59' \n",
+    ">>> lat,lon,alt = 3,5,900 \n",
+    ">>> para_input,para_output = nrlmsise00(t,lat,lon,alt,swdata,omode='Oxygen',aphmode = 'Aph')\n",
+    ">>> print(para_input,'\\n')\n",
+    ">>> print(para_output)"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## Change log\n",
+    "- **1.1.0 — Mar 29,  2020**\n",
+    "  - Added the International Standard Atmosphere(ISA) Model up to 86kms  \n",
+    "\n",
+    "## Next release\n",
+    "\n",
+    "- Complete the help documentation\n",
+    "- Improve the code structure to make it easier to read\n",
+    "- Add other atmospheric models, such as the **U.S. Standard Atmosphere 1976(USSA1976)** or **Committee on Extension to the Standard Atmosphere(COESA)** up to 1000km, **Unofficial Australian Standard Atmosphere 2000(UASA2000)**, and the **Jacchia-Bowman 2008 Empirical Thermospheric Density Model(JB2008)**\n",
+    "\n",
+    "## Reference\n",
+    "\n",
+    "- U.S. Standard Atmosphere, 1976, U.S. Government Printing Office, Washington, D.C. \n",
+    "- [Public Domain Aeronautical Software](http://www.pdas.com/atmos.html) \n",
+    "- https://gist.github.com/buzzerrookie/5b6438c603eabf13d07e\n",
+    "- https://ww2.mathworks.cn/help/aerotbx/ug/atmosisa.html\n",
+    "\n",
+    "* [Original Fortran and C code](https://ccmc.gsfc.nasa.gov/pub/modelweb/atmospheric/msis/)\n",
+    "* [MSISE-00 in Python and Matlab](https://github.com/space-physics/msise00)\n",
+    "* [NRLMSISE-00 Atmosphere Model - Matlab](https://ww2.mathworks.cn/matlabcentral/fileexchange/56253-nrlmsise-00-atmosphere-model?requestedDomain=zh)\n",
+    "* [NRLMSISE-00 Atmosphere Model - Aerospace Blockset](https://www.mathworks.com/help/aeroblks/nrlmsise00atmospheremodel.html?requestedDomain=)\n",
+    "* [NRLMSISE-00 Atmosphere Model - CCMC](https://ccmc.gsfc.nasa.gov/modelweb/models/nrlmsise00.php)\n",
+    "* [NRLMSISE-00 empirical model of the atmosphere: Statistical comparisons and scientific issues](http://onlinelibrary.wiley.com/doi/10.1029/2002JA009430/pdf)\n",
+    "\n"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.7.6"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}